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IMO safe shell scripting is kind of dead. I can do it if I really have to, but too many external programs have tricky "convenience" features like interpreting flags after positional parameters, etc.
Shellcheck currently gives Sample 1 a pass. I hope this is something it can be modified to catch.
Basically, the -v case was by design, so for `-v 'hash[$key]'`, "$key is expanded before the array subscript evaluation, and then the whole array plus expanded index is evaluated in a second pass". "Newer versions of bash (5.0 and higher) have a assoc_expand_once option which will suppress the multiple evaluations"
Note that the `-v` case doesn't really work the way one may infer from reading the OP:
> $ key='$(cat /etc/passwd > /tmp/pwned)'
> $ [[ -v 'x[$key]' ]]
> bash: $(cat /etc/passwd > /tmp/pwned): syntax error: operand expected (error token is "$(cat /etc/passwd > /tmp/pwned)") *
> [[ -v "${x[$key]}" ]]
> bash: $(cat /etc/passwd > /tmp/pwned): syntax error: operand expected (error token is "$(cat /etc/passwd > /tmp/pwned)")